OV - exec - Profiling MPI #0.0- node ip-172-31-47-249.ec2.internal - process 60777

▶Environment Variables

 if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then

BASH_FUNC_switchml%%=() {  typeset swfound=1;

 _mlrv="MODULES_RUNENV_${_mlv}";

 _mlshdbg=''

BASH_FUNC_module%%=() {  _module_raw "$@" 2>&1

 if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then

 IFS=$_mlIFS;

 if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then

 _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' ";

BASH_FUNC_ml%%=() {  module ml "$@"

BASH_FUNC__module_raw%%=() {  unset _mlshdbg;

BASH_FUNC_which%%=() {  ( alias;

 _mlIFS=$IFS;

 typeset swfound=0;

 typeset swname='compatibility';

 MODULES_USE_COMPAT_VERSION=1;

 _mlstatus=$?;

SHELL=/bin/bash

BLAS_STATIC=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/libarmpl_lp64.a

HISTCONTROL=ignoredups

BLAS_SHARED=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/libarmpl_lp64.so

OMPI_UNIVERSE_SIZE=96

QAAS_MAX_ALLOWED_EXEC_TIME=180

OMP_AFFINITY_FORMAT=OMP: pid %P tid %i thread %n bound to OS proc set {%A}

PKG_CONFIG_PATH=/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/pkgconfig:

PMIX_HOSTNAME=ip-172-31-47-249

SYSTEMD_COLORS=false

HOSTNAME=ip-172-31-47-249.ec2.internal

HISTSIZE=1000

OMPI_COMM_WORLD_NODE_RANK=0

PMIX_SECURITY_MODE=native

SSH_AUTH_SOCK=/tmp/ssh-XXXXAAuNRk/agent.8308

GCC_INCLUDES=/opt/arm/gcc-14.2.0_AmazonLinux-2023/include

GCC_BUILD=408

ARMPL_BUILD=:4

FOM_UNIT=atoms/us

OMPI_COMM_WORLD_LOCAL_RANK=0

COMPILER_PATH=/opt/arm/gcc-14.2.0_AmazonLinux-2023

PMIX_GDS_MODULE=shmem2,hash

OMPI_MCA_cpu_type=aarch64

OMP_PLACES=threads

PWD=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/multicore/gcc_1/oneview_run_1741097920

GCC_LIBRARIES=:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib64:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib64

LOGNAME=hbollore

XDG_SESSION_TYPE=tty

MODULESHOME=/usr/share/Modules

MANPATH=/opt/arm/gcc-14.2.0_AmazonLinux-2023/share/man:/opt/arm/gcc-14.2.0_AmazonLinux-2023/share/man:/usr/share/man:

ARMPL_INCLUDES=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/include

FOM_TYPE=RATE

_=/usr/bin/env

PMIX_SYSTEM_TMPDIR=/tmp

PMIX_SERVER_URI41=prterun-ip-172-31-47-249-60763@0.0;tcp4://172.31.47.249:36555

OMPI_ARGV=lprof -collect-hwc abs-xp=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/multicore/gcc_1/oneview_results_1741097920/tools/lprof_npsu_run_13 host=ip-172-31-47-249.ec2.internal

PMIX_BFROP_BUFFER_TYPE=PMIX_BFROP_BUFFER_NON_DESC

MOTD_SHOWN=pam

ARMPL_DIR=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc

HOME=/home/hbollore

OMPI_NUM_APP_CTX=1

LANG=C.UTF-8

LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36:

PMIX_VERSION=5.0.4

OMPI_LIBDIR_LOC=/home/hbollore/soft/openmpi-5.0.6-gnu-14.2.0/lib

LAPACK=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/libarmpl_lp64.a

OPAL_USER_PARAMS_GIVEN=1

OMPI_WORLD_LOCAL_SIZE=1

SSH_CONNECTION=193.51.33.67 60253 172.31.47.249 22

OMPI_WORLD_SIZE=1

PMIX_RANK=0

GCC_DIR=/opt/arm/gcc-14.2.0_AmazonLinux-2023

PMIX_SERVER_URI2=prterun-ip-172-31-47-249-60763@0.0;tcp4://172.31.47.249:36555

PMIX_SERVER_URI3=prterun-ip-172-31-47-249-60763@0.0;tcp4://172.31.47.249:36555

OMPI_MCA_initial_wdir=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/multicore/gcc_1/oneview_run_1741097920

PMIX_SERVER_URI4=prterun-ip-172-31-47-249-60763@0.0;tcp4://172.31.47.249:36555

OMP_PROC_BIND=spread

PRTE_SHARED_FS=FALSE

MODULEPATH_modshare=/opt/arm/modulefiles:1:/usr/share/Modules/modulefiles:1:/etc/modulefiles:1:/usr/share/modulefiles:1

XDG_SESSION_CLASS=user

SELINUX_ROLE_REQUESTED=

PMIX_SERVER_URI21=prterun-ip-172-31-47-249-60763@0.0;tcp4://172.31.47.249:36555

TERM=xterm-256color

MPI_PROVIDER=OpenMPI

LESSOPEN=||/usr/bin/lesspipe.sh %s

USER=hbollore

OMPI_TOOL_NAME=mpirun

OMP_DISPLAY_ENV=TRUE

LIBRARY_PATH=/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib64:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib64:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib:

OMPI_FILE_LOCATION=/tmp/prterun.ip-172-31-47-249.60763.1005/1/0

OMPI_FC=gfortran

PMIX_PARAM_FILE_PASSED=1

OMPI_COMM_WORLD_SIZE=1

MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD

LOADEDMODULES=

OMPI_CC=gcc

SELINUX_USE_CURRENT_RANGE=

ARMPL_LIBRARIES=/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib

SHLVL=2

LAPACK_SHARED=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/libarmpl_lp64.so

OMPI_COMM_WORLD_LOCAL_SIZE=1

XDG_SESSION_ID=3

PMIX_SERVER_TMPDIR=/tmp/prterun.ip-172-31-47-249.60763.1005

OMP_DISPLAY_AFFINITY=TRUE

FOM_REGEX=(?<=Average atom rate:).*(?=atoms/us)

LD_LIBRARY_PATH=/home/hbollore/soft/openmpi-5.0.6-gnu-14.2.0/lib:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib64:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib64:/opt/arm/gcc-14.2.0_AmazonLinux-2023/lib:::/home/hbollore/MAQAODEV/lib

OMPI_COMMAND=/home/hbollore/MAQAODEV/bin/maqao

XDG_RUNTIME_DIR=/run/user/1005

LAPACK_STATIC=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/libarmpl_lp64.a

S_COLORS=auto

OMPI_VERSION=5.0.6

QAAS_BUILD_DIR=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/build/CoMD/../gcc_1

SSH_CLIENT=193.51.33.67 60253 22

OMP_NUM_THREADS=88

PMIX_NAMESPACE=prterun-ip-172-31-47-249-60763@1

which_declare=declare -f

PRTE_LAUNCHED=1

OMPI_MCA_PREFIXES=mca,opal,ompi,atomic,memheap,scoll,spml,sshmem,bml,coll,fbtl,fcoll,fs,hook,io,mtl,op,osc,part,pml,sharedfp,topo,vprotocol,accelerator,allocator,backtrace,btl,dl,hwloc,if,installdirs,memchecker,memcpy,memory,mpool,patcher,rcache,reachable,shmem,smsc,threads,timer

BLAS=:/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/lib/libarmpl_lp64.a

PATH=/home/hbollore/soft/openmpi-5.0.6-gnu-14.2.0/bin:/opt/arm/gcc-14.2.0_AmazonLinux-2023/binutils_bin:/opt/arm/gcc-14.2.0_AmazonLinux-2023/bin:/home/hbollore/.local/bin:/home/hbollore/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin

SELINUX_LEVEL_REQUESTED=

MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles:/usr/share/modulefiles:/opt/arm/modulefiles

DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1005/bus

OMPI_CXX=g++

OMPI_MCA_num_procs=1

MAIL=/var/spool/mail/hbollore

SSH_TTY=/dev/pts/0

CPATH=/opt/arm/armpl-24.10.1_AmazonLinux-2023_gcc/include:/opt/arm/gcc-14.2.0_AmazonLinux-2023/include:/opt/arm/gcc-14.2.0_AmazonLinux-2023/include:

QAAS_DEFAULT_REPETITIONS=11

OLDPWD=/home/hbollore/qaas/qaas-runs/174-108-7908/intel/CoMD/run/oneview_runs/multicore/gcc_1/oneview_run_1741097920

VERBOSE=1

MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl

OMPI_COMM_WORLD_RANK=0

▶Path Number Loops Profile for MPI #0.0 - node ip-172-31-47-249.ec2.internal - process 60777 - thread 60777

Profiling MPI #0.0 - node ip-172-31-47-249.ec2.internal - process 60777 - thread 60777

Name	Module	Coverage (%)	Time (s)
►ljForce._omp_fn.1+	exec	62.72	5.32
►Loop 129 - ljForce.c:172-216 - exec+		54.12	4.59
►Loop 131 - ljForce.c:175-216 - exec+		54.12	4.59
►Loop 130 - ljForce.c:178-216 - exec+		54.12	4.59
►Loop 132 - ljForce.c:178-216 - exec+		54.12	4.59
○Loop 133 - ljForce.c:191-216 - exec		54.12	4.59
►updateLinkCells+	exec	18.26	1.55
►Loop 121 - linkCells.c:211-385 - exec+		0.24	0.02
►Loop 120 - linkCells.c:211-385 - exec+		0.24	0.02
►Loop 119 - linkCells.c:211-385 - exec+		0.24	0.02
○Loop 118 - linkCells.c:291-385 - exec		0.24	0.02
○putAtomInBox	exec	5.24	0.44
►loadAtomsBuffer+	exec	2.83	0.24
►Loop 46 - haloExchange.c:376-390 - exec+		2.59	0.22
○Loop 47 - haloExchange.c:380-390 - exec		2.59	0.22
►advanceVelocity._omp_fn.0+	exec	1.71	0.14
►Loop 150 - timestep.c:71-78 - exec+		1.12	0.09
►Loop 148 - timestep.c:71-78 - exec+		1.12	0.09
►Loop 147 - timestep.c:74-78 - exec+		1.12	0.09
○Loop 149 - timestep.c:74-76 - exec		1.12	0.09
►ljForce._omp_fn.0+	exec	1.47	0.12
►Loop 125 - ljForce.c:157-161 - exec+		1.47	0.12
○Loop 127 - ljForce.c:161-161 - exec		1.47	0.12
►sortAtomsInCell+	exec	1.41	0.12
○Loop 84 - haloExchange.c:621-630 - exec		1.06	0.09
►Loop 81 - haloExchange.c:621-645 - exec+		0.12	0.01
○Loop 83 - haloExchange.c:633-642 - exec		0.12	0.01
►getBoxFromTuple+	exec	1.18	0.10
○Loop 116 - linkCells.c:217-250 - exec		0.35	0.03
►moveAtom+	exec	1.00	0.08
○Loop 117 - linkCells.c:268-335 - exec		0.12	0.01
○__GI___memcpy_sve	libc.so.6	0.77	0.06
►advancePosition._omp_fn.0+	exec	0.65	0.05
►Loop 143 - timestep.c:85-94 - exec+		0.59	0.05
►Loop 144 - timestep.c:88-94 - exec+		0.59	0.05
○Loop 145 - timestep.c:88-94 - exec		0.59	0.05
○initAtoms	exec	0.65	0.05
○gomp_team_barrier_wait_end	libgomp.so.1.0.0	0.59	0.05
○msort_with_tmp.part.0	libc.so.6	0.29	0.02
○gomp_barrier_wait_end	libgomp.so.1.0.0	0.29	0.02
○unloadAtomsBuffer	exec	0.18	0.01
►kineticEnergy._omp_fn.0+	exec	0.12	0.01
►Loop 156 - timestep.c:107-116 - exec+		0.12	0.01
►Loop 153 - timestep.c:110-116 - exec+		0.12	0.01
►Loop 152 - timestep.c:110-115 - exec+		0.06	0.00
○Loop 154 - timestep.c:110-115 - exec		0.06	0.00
○Loop 155 - timestep.c:110-116 - exec		0.06	0.00
○getNeighborBoxes	exec	0.12	0.01
○mca_pml_ob1_recv_req_start	libmpi.so.40.40.6	0.06	0.00
○mca_pml_ob1_rget_completion	libmpi.so.40.40.6	0.06	0.00
○mca_pml_ob1_recv_request_progress_rget	libmpi.so.40.40.6	0.06	0.00
○__GI___libc_malloc	libc.so.6	0.06	0.00
○__aarch64_ldadd4_acq_rel	libgomp.so.1.0.0	0.06	0.00
○__GI___qsort_r	libc.so.6	0.06	0.00
○createFccLattice	exec	0.06	0.00
►setTemperature._omp_fn.0+	exec	0.06	0.00
►Loop 93 - initAtoms.c:151-162 - exec+		0.06	0.00
►Loop 94 - initAtoms.c:154-162 - exec+		0.06	0.00
○Loop 95 - initAtoms.c:154-162 - exec		0.06	0.00
○sortAtomsById	exec	0.06	0.00

Report Configuration

Warning

▶Environment Variables

▶Path Number Loops Profile for MPI #0.0 - node ip-172-31-47-249.ec2.internal - process 60777 - thread 60777

Profiling MPI #0.0 - node ip-172-31-47-249.ec2.internal - process 60777 - thread 60777